IL_9E0N_098

3D structure

PDB id

9E0N (explore in PDB, NAKB, or RNA 3D Hub)

Description

M. smegmatis unmethylated 70S ribosome structure

Experimental method

ELECTRON MICROSCOPY

Resolution

3.24 Å

Loop

Sequence

AUC*GGUUU

Length

8 nucleotides

Bulged bases

9E0N|1|A|U|2715

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9E0N_098 not in the Motif Atlas

Geometric match to IL_5J7L_337

Geometric discrepancy: 0.2096

The information below is about IL_5J7L_337

Detailed Annotation

Major groove minor groove platform with extra cWW

Broad Annotation

Major groove minor groove platform with extra cWW

Motif group

IL_51387.3

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

21

Unit IDs

9E0N|1|A|A|2683
9E0N|1|A|U|2684
9E0N|1|A|C|2685
*
9E0N|1|A|G|2713
9E0N|1|A|G|2714
9E0N|1|A|U|2715
9E0N|1|A|U|2716
9E0N|1|A|U|2717

Current chains

Chain A

23S rRNA

Nearby chains

Chain 8

50S ribosomal protein bL37

Chain N

Large ribosomal subunit protein uL16