IL_9E0N_113

3D structure

PDB id

9E0N (explore in PDB, NAKB, or RNA 3D Hub)

Description

M. smegmatis unmethylated 70S ribosome structure

Experimental method

ELECTRON MICROSCOPY

Resolution

3.24 Å

Loop

Sequence

GAC*GCAC

Length

7 nucleotides

Bulged bases

9E0N|1|A|A|3100

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9E0N_113 not in the Motif Atlas

Geometric match to IL_5ML7_010

Geometric discrepancy: 0.211

The information below is about IL_5ML7_010

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_68118.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

27

Unit IDs

9E0N|1|A|G|3059
9E0N|1|A|A|3060
9E0N|1|A|C|3061
*
9E0N|1|A|G|3098
9E0N|1|A|C|3099
9E0N|1|A|A|3100
9E0N|1|A|C|3101

Current chains

Chain A

23S rRNA

Nearby chains

Chain O

Large ribosomal subunit protein bL17

Chain Q

Large ribosomal subunit protein bL19