IL_9E0N_136

3D structure

PDB id

9E0N (explore in PDB, NAKB, or RNA 3D Hub)

Description

M. smegmatis unmethylated 70S ribosome structure

Experimental method

ELECTRON MICROSCOPY

Resolution

3.24 Å

Loop

Sequence

GGAUGACG*UGUAAAC

Length

15 nucleotides

Bulged bases

9E0N|1|a|U|412

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9E0N_136 not in the Motif Atlas

Geometric match to IL_4LFB_017

Geometric discrepancy: 0.2363

The information below is about IL_4LFB_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_62329.1

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

9E0N|1|a|G|409
9E0N|1|a|G|410
9E0N|1|a|A|411
9E0N|1|a|U|412
9E0N|1|a|G|413
9E0N|1|a|A|414
9E0N|1|a|C|415
9E0N|1|a|G|416
*
9E0N|1|a|U|427
9E0N|1|a|G|428
9E0N|1|a|U|429
9E0N|1|a|A|430
9E0N|1|a|A|431
9E0N|1|a|A|432
9E0N|1|a|C|433

Current chains

Chain a

16S rRNA

Nearby chains

Chain d

Small ribosomal subunit protein uS4