IL_9E0N_145

3D structure

PDB id

9E0N (explore in PDB, NAKB, or RNA 3D Hub)

Description

M. smegmatis unmethylated 70S ribosome structure

Experimental method

ELECTRON MICROSCOPY

Resolution

3.24 Å

Loop

Sequence

GU*AUAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9E0N_145 not in the Motif Atlas

Geometric match to IL_4LFB_025

Geometric discrepancy: 0.2446

The information below is about IL_4LFB_025

Detailed Annotation

Major groove minor groove platform; mini C-loop

Broad Annotation

No text annotation

Motif group

IL_73108.2

Basepair signature

cWW-cWS-cSH-cWW

Number of instances in this motif group

23

Unit IDs

9E0N|1|a|G|577
9E0N|1|a|U|578
*
9E0N|1|a|A|620
9E0N|1|a|U|621
9E0N|1|a|A|622
9E0N|1|a|C|623

Current chains

Chain a

16S rRNA

Nearby chains

Chain h

Small ribosomal subunit protein uS8

Chain q

Small ribosomal subunit protein uS17