IL_9E0P_012

3D structure

PDB id

9E0P (explore in PDB, NAKB, or RNA 3D Hub)

Description

M. smegmatis methylated 70S ribosome structure

Experimental method

ELECTRON MICROSCOPY

Resolution

3.17 Å

Loop

Sequence

GUAC*GAGUGAAAGAGUAC

Length

18 nucleotides

Bulged bases

9E0P|1|A|G|591, 9E0P|1|A|A|595

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9E0P_012 not in the Motif Atlas

Geometric match to IL_8P9A_243

Geometric discrepancy: 0.1719

The information below is about IL_8P9A_243

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_44923.1

Basepair signature

cWW-cWS-tSH-L-tWH-cWW-tSS-tSH-L-R-L

Number of instances in this motif group

9

Unit IDs

9E0P|1|A|G|569
9E0P|1|A|U|570
9E0P|1|A|A|571
9E0P|1|A|C|572
*
9E0P|1|A|G|583
9E0P|1|A|A|584
9E0P|1|A|G|585
9E0P|1|A|U|586
9E0P|1|A|G|587
9E0P|1|A|A|588
9E0P|1|A|A|589
9E0P|1|A|A|590
9E0P|1|A|G|591
9E0P|1|A|A|592
9E0P|1|A|G|593
9E0P|1|A|U|594
9E0P|1|A|A|595
9E0P|1|A|C|596

Current chains

Chain A

23S rRNA

Nearby chains

Chain T

Large ribosomal subunit protein uL22

Chain V

Large ribosomal subunit protein uL24