IL_9E0P_013

3D structure

PDB id

9E0P (explore in PDB, NAKB, or RNA 3D Hub)

Description

M. smegmatis methylated 70S ribosome structure

Experimental method

ELECTRON MICROSCOPY

Resolution

3.17 Å

Loop

Sequence

AGAG*UGAU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9E0P_013 not in the Motif Atlas

Geometric match to IL_5J7L_256

Geometric discrepancy: 0.1418

The information below is about IL_5J7L_256

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.15

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

34

Unit IDs

9E0P|1|A|A|623
9E0P|1|A|G|624
9E0P|1|A|A|625
9E0P|1|A|G|626
*
9E0P|1|A|U|646
9E0P|1|A|G|647
9E0P|1|A|A|648
9E0P|1|A|U|649

Current chains

Chain A

23S rRNA

Nearby chains

Chain K

Large ribosomal subunit protein uL13

Chain R

Large ribosomal subunit protein bL20