IL_9E0P_035

3D structure

PDB id

9E0P (explore in PDB, NAKB, or RNA 3D Hub)

Description

M. smegmatis methylated 70S ribosome structure

Experimental method

ELECTRON MICROSCOPY

Resolution

3.17 Å

Loop

Sequence

GG*UGC

Length

5 nucleotides

Bulged bases

9E0P|1|A|G|1085

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9E0P_035 not in the Motif Atlas

Geometric match to IL_8VFS_001

Geometric discrepancy: 0.3957

The information below is about IL_8VFS_001

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_28408.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

76

Unit IDs

9E0P|1|A|G|1066
9E0P|1|A|G|1067
*
9E0P|1|A|U|1084
9E0P|1|A|G|1085
9E0P|1|A|C|1086

Current chains

Chain A

23S rRNA

Nearby chains

Chain 1

Large ribosomal subunit protein uL30

Chain 8

50S ribosomal protein bL37

Chain B

5S ribosomal RNA; 5S rRNA