IL_9E0P_074

3D structure

PDB id

9E0P (explore in PDB, NAKB, or RNA 3D Hub)

Description

M. smegmatis methylated 70S ribosome structure

Experimental method

ELECTRON MICROSCOPY

Resolution

3.17 Å

Loop

Sequence

GC*GAC

Length

5 nucleotides

Bulged bases

9E0P|1|A|A|2205

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9E0P_074 not in the Motif Atlas

Geometric match to IL_4V9F_064

Geometric discrepancy: 0.1379

The information below is about IL_4V9F_064

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.7

Basepair signature

cWW-L-cWW

Number of instances in this motif group

132

Unit IDs

9E0P|1|A|G|1987
9E0P|1|A|C|1988
*
9E0P|1|A|G|2204
9E0P|1|A|A|2205
9E0P|1|A|C|2206

Current chains

Chain A

23S rRNA

Nearby chains

Chain C

Large ribosomal subunit protein uL2

Chain u

Conserved domain protein