IL_9E0P_077

3D structure

PDB id

9E0P (explore in PDB, NAKB, or RNA 3D Hub)

Description

M. smegmatis methylated 70S ribosome structure

Experimental method

ELECTRON MICROSCOPY

Resolution

3.17 Å

Loop

Sequence

UG*UAAA

Length

6 nucleotides

Bulged bases

9E0P|1|A|A|2123, 9E0P|1|A|A|2124

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9E0P_077 not in the Motif Atlas

Geometric match to IL_4V9F_067

Geometric discrepancy: 0.1601

The information below is about IL_4V9F_067

Detailed Annotation

Major groove intercalation

Broad Annotation

Major groove intercalation

Motif group

IL_82107.5

Basepair signature

cWW-cWW

Number of instances in this motif group

31

Unit IDs

9E0P|1|A|U|2058
9E0P|1|A|G|2059
*
9E0P|1|A|U|2122
9E0P|1|A|A|2123
9E0P|1|A|A|2124
9E0P|1|A|A|2125

Current chains

Chain A

23S rRNA

Nearby chains

Chain C

Large ribosomal subunit protein uL2