IL_9E0P_080

3D structure

PDB id

9E0P (explore in PDB, NAKB, or RNA 3D Hub)

Description

M. smegmatis methylated 70S ribosome structure

Experimental method

ELECTRON MICROSCOPY

Resolution

3.17 Å

Loop

Sequence

AGGACC*GAGAAU

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9E0P_080 not in the Motif Atlas

Geometric match to IL_8P9A_451

Geometric discrepancy: 0.3143

The information below is about IL_8P9A_451

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_85536.2

Basepair signature

cWW-tSH-L-R-tHS-cWW-cWW

Number of instances in this motif group

8

Unit IDs

9E0P|1|A|A|2073
9E0P|1|A|G|2074
9E0P|1|A|G|2075
9E0P|1|A|A|2076
9E0P|1|A|C|2077
9E0P|1|A|C|2078
*
9E0P|1|A|G|2105
9E0P|1|A|A|2106
9E0P|1|A|G|2107
9E0P|1|A|A|2108
9E0P|1|A|A|2109
9E0P|1|A|U|2110

Current chains

Chain A

23S rRNA

Nearby chains