IL_9E0P_093

3D structure

PDB id

9E0P (explore in PDB, NAKB, or RNA 3D Hub)

Description

M. smegmatis methylated 70S ribosome structure

Experimental method

ELECTRON MICROSCOPY

Resolution

3.17 Å

Loop

Sequence

CUGUGAAG*UGGAG

Length

13 nucleotides

Bulged bases

9E0P|1|A|U|2355, 9E0P|1|A|G|2356

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9E0P_093 not in the Motif Atlas

Geometric match to IL_5J7L_330

Geometric discrepancy: 0.3446

The information below is about IL_5J7L_330

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_70923.9

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

27

Unit IDs

9E0P|1|A|C|2352
9E0P|1|A|U|2353
9E0P|1|A|G|2354
9E0P|1|A|U|2355
9E0P|1|A|G|2356
9E0P|1|A|A|2357
9E0P|1|A|A|2358
9E0P|1|A|G|2359
*
9E0P|1|A|U|2378
9E0P|1|A|G|2379
9E0P|1|A|G|2380
9E0P|1|A|A|2381
9E0P|1|A|G|2382

Current chains

Chain A

23S rRNA

Nearby chains