IL_9E0P_095

3D structure

PDB id

9E0P (explore in PDB, NAKB, or RNA 3D Hub)

Description

M. smegmatis methylated 70S ribosome structure

Experimental method

ELECTRON MICROSCOPY

Resolution

3.17 Å

Loop

Sequence

CAA*UGUUG

Length

8 nucleotides

Bulged bases

9E0P|1|A|U|2543

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9E0P_095 not in the Motif Atlas

Geometric match to IL_4WF9_086

Geometric discrepancy: 0.3056

The information below is about IL_4WF9_086

Detailed Annotation

Isolated tHS basepair with bulges

Broad Annotation

No text annotation

Motif group

IL_14250.2

Basepair signature

cWW-tSH-L-cWW-L

Number of instances in this motif group

11

Unit IDs

9E0P|1|A|C|2521
9E0P|1|A|A|2522
9E0P|1|A|A|2523
*
9E0P|1|A|U|2541
9E0P|1|A|G|2542
9E0P|1|A|U|2543
9E0P|1|A|U|2544
9E0P|1|A|G|2545

Current chains

Chain A

23S rRNA

Nearby chains

Chain B

5S ribosomal RNA; 5S rRNA

Chain F

Large ribosomal subunit protein uL5

Chain P

Large ribosomal subunit protein uL18