IL_9E0P_098

3D structure

PDB id

9E0P (explore in PDB, NAKB, or RNA 3D Hub)

Description

M. smegmatis methylated 70S ribosome structure

Experimental method

ELECTRON MICROSCOPY

Resolution

3.17 Å

Loop

Sequence

AG*CCU

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9E0P_098 not in the Motif Atlas

Geometric match to IL_9DFE_091

Geometric discrepancy: 0.2177

The information below is about IL_9DFE_091

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_15011.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

48

Unit IDs

9E0P|1|A|A|2677
9E0P|1|A|G|2678
*
9E0P|1|A|C|2722
9E0P|1|A|C|2723
9E0P|1|A|U|2724

Current chains

Chain A

23S rRNA

Nearby chains

Chain 8

50S ribosomal protein bL37

Chain D

Large ribosomal subunit protein uL3