IL_9E0P_099

3D structure

PDB id

9E0P (explore in PDB, NAKB, or RNA 3D Hub)

Description

M. smegmatis methylated 70S ribosome structure

Experimental method

ELECTRON MICROSCOPY

Resolution

3.17 Å

Loop

Sequence

GG*CAC

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9E0P_099 not in the Motif Atlas

Geometric match to IL_3OXE_003

Geometric discrepancy: 0.1498

The information below is about IL_3OXE_003

Detailed Annotation

Major groove platform

Broad Annotation

No text annotation

Motif group

IL_48076.6

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

41

Unit IDs

9E0P|1|A|G|2678
9E0P|1|A|G|2679
*
9E0P|1|A|C|2720
9E0P|1|A|A|2721
9E0P|1|A|C|2722

Current chains

Chain A

23S rRNA

Nearby chains

Chain 8

50S ribosomal protein bL37

Chain D

Large ribosomal subunit protein uL3

Chain N

Large ribosomal subunit protein uL16