IL_9E0P_102

3D structure

PDB id

9E0P (explore in PDB, NAKB, or RNA 3D Hub)

Description

M. smegmatis methylated 70S ribosome structure

Experimental method

ELECTRON MICROSCOPY

Resolution

3.17 Å

Loop

Sequence

CCAAG*CGACG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9E0P_102 not in the Motif Atlas

Geometric match to IL_4WF9_093

Geometric discrepancy: 0.2198

The information below is about IL_4WF9_093

Detailed Annotation

Double sheared with non-canonical cWW

Broad Annotation

Double sheared

Motif group

IL_87767.3

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

18

Unit IDs

9E0P|1|A|C|2690
9E0P|1|A|C|2691
9E0P|1|A|A|2692
9E0P|1|A|A|2693
9E0P|1|A|G|2694
*
9E0P|1|A|C|2704
9E0P|1|A|G|2705
9E0P|1|A|A|2706
9E0P|1|A|C|2707
9E0P|1|A|G|2708

Current chains

Chain A

23S rRNA

Nearby chains

Chain 7

50S ribosomal protein L36

Chain N

Large ribosomal subunit protein uL16

Chain W

Large ribosomal subunit protein bL25