IL_9E0P_104

3D structure

PDB id

9E0P (explore in PDB, NAKB, or RNA 3D Hub)

Description

M. smegmatis methylated 70S ribosome structure

Experimental method

ELECTRON MICROSCOPY

Resolution

3.17 Å

Loop

Sequence

CUC*GCGAG

Length

8 nucleotides

Bulged bases

9E0P|1|A|G|2800, 9E0P|1|A|A|2801

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9E0P_104 not in the Motif Atlas

Geometric match to IL_4WF9_095

Geometric discrepancy: 0.1293

The information below is about IL_4WF9_095

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_07785.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

33

Unit IDs

9E0P|1|A|C|2734
9E0P|1|A|U|2735
9E0P|1|A|C|2736
*
9E0P|1|A|G|2798
9E0P|1|A|C|2799
9E0P|1|A|G|2800
9E0P|1|A|A|2801
9E0P|1|A|G|2802

Current chains

Chain A

23S rRNA

Nearby chains

Chain 3

Large ribosomal subunit protein bL32

Chain D

Large ribosomal subunit protein uL3