IL_9E0P_128

3D structure

PDB id

9E0P (explore in PDB, NAKB, or RNA 3D Hub)

Description

M. smegmatis methylated 70S ribosome structure

Experimental method

ELECTRON MICROSCOPY

Resolution

3.17 Å

Loop

Sequence

UGAU*GG

Length

6 nucleotides

Bulged bases

9E0P|1|a|G|126, 9E0P|1|a|A|127

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9E0P_128 not in the Motif Atlas

Geometric match to IL_4LFB_007

Geometric discrepancy: 0.2603

The information below is about IL_4LFB_007

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_33761.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

3

Unit IDs

9E0P|1|a|U|125
9E0P|1|a|G|126
9E0P|1|a|A|127
9E0P|1|a|U|128
*
9E0P|1|a|G|231
9E0P|1|a|G|232

Current chains

Chain a

16S rRNA

Nearby chains

Chain p

Small ribosomal subunit protein bS16

Chain q

Small ribosomal subunit protein uS17

Chain t

Small ribosomal subunit protein bS20