IL_9E0P_138
3D structure
- PDB id
- 9E0P (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- M. smegmatis methylated 70S ribosome structure
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.17 Å
Loop
- Sequence
- GGAUGACG*UGUAAAC
- Length
- 15 nucleotides
- Bulged bases
- 9E0P|1|a|U|412, 9E0P|1|a|G|413
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9E0P_138 not in the Motif Atlas
- Geometric match to IL_4LFB_017
- Geometric discrepancy: 0.2386
- The information below is about IL_4LFB_017
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_62329.1
- Basepair signature
- cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW
- Number of instances in this motif group
- 2
Unit IDs
9E0P|1|a|G|409
9E0P|1|a|G|410
9E0P|1|a|A|411
9E0P|1|a|U|412
9E0P|1|a|G|413
9E0P|1|a|A|414
9E0P|1|a|C|415
9E0P|1|a|G|416
*
9E0P|1|a|U|427
9E0P|1|a|G|428
9E0P|1|a|U|429
9E0P|1|a|A|430
9E0P|1|a|A|431
9E0P|1|a|A|432
9E0P|1|a|C|433
Current chains
- Chain a
- 16S rRNA
Nearby chains
- Chain d
- Small ribosomal subunit protein uS4
Coloring options: