IL_9E0P_140

3D structure

PDB id

9E0P (explore in PDB, NAKB, or RNA 3D Hub)

Description

M. smegmatis methylated 70S ribosome structure

Experimental method

ELECTRON MICROSCOPY

Resolution

3.17 Å

Loop

Sequence

AGACG*CGGUAU

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9E0P_140 not in the Motif Atlas

Geometric match to IL_4LFB_018

Geometric discrepancy: 0.2492

The information below is about IL_4LFB_018

Detailed Annotation

6x5 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_88269.4

Basepair signature

cWW-tWW-cSH-tWH-tHS-cWW

Number of instances in this motif group

3

Unit IDs

9E0P|1|a|A|446
9E0P|1|a|G|447
9E0P|1|a|A|448
9E0P|1|a|C|449
9E0P|1|a|G|450
*
9E0P|1|a|C|463
9E0P|1|a|G|464
9E0P|1|a|G|465
9E0P|1|a|U|466
9E0P|1|a|A|467
9E0P|1|a|U|468

Current chains

Chain a

16S rRNA

Nearby chains

Chain d

Small ribosomal subunit protein uS4

Chain p

Small ribosomal subunit protein bS16