IL_9E0P_144

3D structure

PDB id

9E0P (explore in PDB, NAKB, or RNA 3D Hub)

Description

M. smegmatis methylated 70S ribosome structure

Experimental method

ELECTRON MICROSCOPY

Resolution

3.17 Å

Loop

Sequence

CGUAAAG*CG

Length

9 nucleotides

Bulged bases

9E0P|1|a|A|552

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9E0P_144 not in the Motif Atlas

Geometric match to IL_5J7L_026

Geometric discrepancy: 0.2743

The information below is about IL_5J7L_026

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_38186.6

Basepair signature

cWW-L-cWW-L-L-R

Number of instances in this motif group

4

Unit IDs

9E0P|1|a|C|549
9E0P|1|a|G|550
9E0P|1|a|U|551
9E0P|1|a|A|552
9E0P|1|a|A|553
9E0P|1|a|A|554
9E0P|1|a|G|555
*
9E0P|1|a|C|862
9E0P|1|a|G|863

Current chains

Chain a

16S rRNA

Nearby chains

Chain l

Small ribosomal subunit protein uS12

Chain q

Small ribosomal subunit protein uS17

Chain u

Conserved domain protein