IL_9E0P_173

3D structure

PDB id

9E0P (explore in PDB, NAKB, or RNA 3D Hub)

Description

M. smegmatis methylated 70S ribosome structure

Experimental method

ELECTRON MICROSCOPY

Resolution

3.17 Å

Loop

Sequence

CGGAUC*GUGAAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9E0P_173 not in the Motif Atlas

Geometric match to IL_8CRE_465

Geometric discrepancy: 0.1955

The information below is about IL_8CRE_465

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_85536.2

Basepair signature

cWW-tSH-L-R-tHS-cWW-cWW

Number of instances in this motif group

8

Unit IDs

9E0P|1|a|C|1285
9E0P|1|a|G|1286
9E0P|1|a|G|1287
9E0P|1|a|A|1288
9E0P|1|a|U|1289
9E0P|1|a|C|1290
*
9E0P|1|a|G|1311
9E0P|1|a|U|1312
9E0P|1|a|G|1313
9E0P|1|a|A|1314
9E0P|1|a|A|1315
9E0P|1|a|G|1316

Current chains

Chain a

16S rRNA

Nearby chains

Chain m

Small ribosomal subunit protein uS13