IL_9E16_012

3D structure

PDB id

9E16 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the ribosome-tunnel occluding hibernation factor bound to the Mycobacterium tuberculosis C- 70S ribosome carrying an E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GGAAGUG*CUCAGUAC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9E16_012 not in the Motif Atlas

Homologous match to IL_8B0X_070

Geometric discrepancy: 0.0773

The information below is about IL_8B0X_070

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_62167.5

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

16

Unit IDs

9E16|1|I|G|190
9E16|1|I|G|191
9E16|1|I|A|192
9E16|1|I|A|193
9E16|1|I|G|194
9E16|1|I|U|195
9E16|1|I|G|196
*
9E16|1|I|C|203
9E16|1|I|U|204
9E16|1|I|C|205
9E16|1|I|A|206
9E16|1|I|G|207
9E16|1|I|U|208
9E16|1|I|A|209
9E16|1|I|C|210

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain 3

50S ribosomal protein L35

Chain L

50S ribosomal protein L15

Chain y

50S ribosomal protein L28 C-