IL_9E16_056

3D structure

PDB id

9E16 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the ribosome-tunnel occluding hibernation factor bound to the Mycobacterium tuberculosis C- 70S ribosome carrying an E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GCCAG*CGC

Length

8 nucleotides

Bulged bases

9E16|1|I|C|1452, 9E16|1|I|G|1463

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9E16_056 not in the Motif Atlas

Homologous match to IL_8B0X_110

Geometric discrepancy: 0.5748

The information below is about IL_8B0X_110

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_63596.14

Basepair signature

cWW-cWS-cSH-tWH-cWW-L

Number of instances in this motif group

22

Unit IDs

9E16|1|I|G|1450
9E16|1|I|C|1451
9E16|1|I|C|1452
9E16|1|I|A|1453
9E16|1|I|G|1454
*
9E16|1|I|C|1462
9E16|1|I|G|1463
9E16|1|I|C|1464

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain 1

Ribosome-tunnel occlusion factor (RTOF)

Chain S

50S ribosomal protein L22

Chain T

50S ribosomal protein L23