IL_9E16_087

3D structure

PDB id

9E16 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the ribosome-tunnel occluding hibernation factor bound to the Mycobacterium tuberculosis C- 70S ribosome carrying an E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

UUAAG*UUAAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9E16_087 not in the Motif Atlas

Homologous match to IL_7A0S_069

Geometric discrepancy: 0.1991

The information below is about IL_7A0S_069

Detailed Annotation

UAA/GAN with extra stack

Broad Annotation

No text annotation

Motif group

IL_89021.4

Basepair signature

cWW-L-R-L-R-tHS-cWW

Number of instances in this motif group

8

Unit IDs

9E16|1|I|U|2085
9E16|1|I|U|2086
9E16|1|I|A|2087
9E16|1|I|A|2088
9E16|1|I|G|2089
*
9E16|1|I|U|2125
9E16|1|I|U|2126
9E16|1|I|A|2127
9E16|1|I|A|2128
9E16|1|I|G|2129

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain n

Transfer RNA; tRNA