IL_9E16_097

3D structure

PDB id

9E16 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the ribosome-tunnel occluding hibernation factor bound to the Mycobacterium tuberculosis C- 70S ribosome carrying an E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

UUUGUGUAGGAUAGGUGGGAGACUGUGAAACC*GGCGGAGUCGUUGUUGAAAUACCACUCUGA

Length

62 nucleotides

Bulged bases

9E16|1|I|U|2348, 9E16|1|I|G|2349, 9E16|1|I|U|2355, 9E16|1|I|G|2361, 9E16|1|I|G|2368, 9E16|1|I|U|2369, 9E16|1|I|A|2395, 9E16|1|I|U|2401, 9E16|1|I|G|2405, 9E16|1|I|U|2409, 9E16|1|I|A|2413, 9E16|1|I|C|2414

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9E16|1|I|U|2344
9E16|1|I|U|2345
9E16|1|I|U|2346
9E16|1|I|G|2347
9E16|1|I|U|2348
9E16|1|I|G|2349
9E16|1|I|U|2350
9E16|1|I|A|2351
9E16|1|I|G|2352
9E16|1|I|G|2353
9E16|1|I|A|2354
9E16|1|I|U|2355
9E16|1|I|A|2356
9E16|1|I|G|2357
9E16|1|I|G|2358
9E16|1|I|U|2359
9E16|1|I|G|2360
9E16|1|I|G|2361
9E16|1|I|G|2362
9E16|1|I|A|2363
9E16|1|I|G|2364
9E16|1|I|A|2365
9E16|1|I|C|2366
9E16|1|I|U|2367
9E16|1|I|G|2368
9E16|1|I|U|2369
9E16|1|I|G|2370
9E16|1|I|A|2371
9E16|1|I|A|2372
9E16|1|I|A|2373
9E16|1|I|C|2374
9E16|1|I|C|2375
*
9E16|1|I|G|2390
9E16|1|I|G|2391
9E16|1|I|C|2392
9E16|1|I|G|2393
9E16|1|I|G|2394
9E16|1|I|A|2395
9E16|1|I|G|2396
9E16|1|I|U|2397
9E16|1|I|C|2398
9E16|1|I|G|2399
9E16|1|I|U|2400
9E16|1|I|U|2401
9E16|1|I|G|2402
9E16|1|I|U|2403
9E16|1|I|U|2404
9E16|1|I|G|2405
9E16|1|I|A|2406
9E16|1|I|A|2407
9E16|1|I|A|2408
9E16|1|I|U|2409
9E16|1|I|A|2410
9E16|1|I|C|2411
9E16|1|I|C|2412
9E16|1|I|A|2413
9E16|1|I|C|2414
9E16|1|I|U|2415
9E16|1|I|C|2416
9E16|1|I|U|2417
9E16|1|I|G|2418
9E16|1|I|A|2419

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain n

Transfer RNA; tRNA