IL_9E16_132
3D structure
- PDB id
- 9E16 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the ribosome-tunnel occluding hibernation factor bound to the Mycobacterium tuberculosis C- 70S ribosome carrying an E-tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- UAUCAG*CGACGACG
- Length
- 14 nucleotides
- Bulged bases
- 9E16|1|a|U|243, 9E16|1|a|C|279
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9E16_132 not in the Motif Atlas
- Homologous match to IL_8B0X_013
- Geometric discrepancy: 0.1528
- The information below is about IL_8B0X_013
- Detailed Annotation
- Kink-turn with non-sequential stacking
- Broad Annotation
- Kink-turn
- Motif group
- IL_46174.6
- Basepair signature
- cWW-cSS-tSS-tSH-L-cWW-tHW-cWW
- Number of instances in this motif group
- 7
Unit IDs
9E16|1|a|U|241
9E16|1|a|A|242
9E16|1|a|U|243
9E16|1|a|C|244
9E16|1|a|A|245
9E16|1|a|G|246
*
9E16|1|a|C|276
9E16|1|a|G|277
9E16|1|a|A|278
9E16|1|a|C|279
9E16|1|a|G|280
9E16|1|a|A|281
9E16|1|a|C|282
9E16|1|a|G|283
Current chains
- Chain a
- 16S ribosomal RNA
Nearby chains
- Chain l
- 30S ribosomal protein S12
- Chain q
- 30S ribosomal protein S17
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