IL_9E16_165

3D structure

PDB id

9E16 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the ribosome-tunnel occluding hibernation factor bound to the Mycobacterium tuberculosis C- 70S ribosome carrying an E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

UGCAU*AUG

Length

8 nucleotides

Bulged bases

9E16|1|a|C|1045

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9E16_165 not in the Motif Atlas

Homologous match to IL_8B0X_046

Geometric discrepancy: 0.114

The information below is about IL_8B0X_046

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_82453.3

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

6

Unit IDs

9E16|1|a|U|1043
9E16|1|a|G|1044
9E16|1|a|C|1045
9E16|1|a|A|1046
9E16|1|a|U|1047
*
9E16|1|a|A|1196
9E16|1|a|U|1197
9E16|1|a|G|1198

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain 9

30S ribosomal protein S14 C-

Chain c

30S ribosomal protein S3

Chain j

30S ribosomal protein S10