IL_9E1S_013
3D structure
- PDB id
- 9E1S (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the ribosome-tunnel occluding hibernation factor bound to the Mycobacterium tuberculosis C- 50S ribosomal subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.39 Å
Loop
- Sequence
- CAAGUAG*CGAACG
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9E1S_013 not in the Motif Atlas
- Homologous match to IL_8B0X_071
- Geometric discrepancy: 0.0876
- The information below is about IL_8B0X_071
- Detailed Annotation
- 7x6 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_02666.3
- Basepair signature
- cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 18
Unit IDs
9E1S|1|I|C|241
9E1S|1|I|A|242
9E1S|1|I|A|243
9E1S|1|I|G|244
9E1S|1|I|U|245
9E1S|1|I|A|246
9E1S|1|I|G|247
*
9E1S|1|I|C|255
9E1S|1|I|G|256
9E1S|1|I|A|257
9E1S|1|I|A|258
9E1S|1|I|C|259
9E1S|1|I|G|260
Current chains
- Chain I
- 23S ribosomal RNA
Nearby chains
- Chain 3
- 50S ribosomal protein L35
- Chain L
- 50S ribosomal protein L15
Coloring options: