IL_9E1S_034
3D structure
- PDB id
- 9E1S (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the ribosome-tunnel occluding hibernation factor bound to the Mycobacterium tuberculosis C- 50S ribosomal subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.39 Å
Loop
- Sequence
- GGG*CAAUC
- Length
- 8 nucleotides
- Bulged bases
- 9E1S|1|I|G|905, 9E1S|1|I|A|917, 9E1S|1|I|A|918, 9E1S|1|I|U|919
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9E1S_034 not in the Motif Atlas
- Homologous match to IL_7A0S_021
- Geometric discrepancy: 0.2496
- The information below is about IL_7A0S_021
- Detailed Annotation
- Multiple bulged bases
- Broad Annotation
- No text annotation
- Motif group
- IL_89509.3
- Basepair signature
- cWW-cWW
- Number of instances in this motif group
- 10
Unit IDs
9E1S|1|I|G|904
9E1S|1|I|G|905
9E1S|1|I|G|906
*
9E1S|1|I|C|916
9E1S|1|I|A|917
9E1S|1|I|A|918
9E1S|1|I|U|919
9E1S|1|I|C|920
Current chains
- Chain I
- 23S ribosomal RNA
Nearby chains
- Chain 1
- Ribosomal tunnel occlusion factor-RTOF
- Chain 2
- 50S ribosomal protein bL34
- Chain C
- 50S ribosomal protein L2
- Chain E
- 50S ribosomal protein L4
- Chain S
- 50S ribosomal protein L22
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