IL_9E1S_058

3D structure

PDB id

9E1S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the ribosome-tunnel occluding hibernation factor bound to the Mycobacterium tuberculosis C- 50S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.39 Å

Loop

Sequence

CGAGG*CGUAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9E1S_058 not in the Motif Atlas

Homologous match to IL_8B0X_112

Geometric discrepancy: 0.0732

The information below is about IL_8B0X_112

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_05821.3

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

19

Unit IDs

9E1S|1|I|C|1488
9E1S|1|I|G|1489
9E1S|1|I|A|1490
9E1S|1|I|G|1491
9E1S|1|I|G|1492
*
9E1S|1|I|C|1501
9E1S|1|I|G|1502
9E1S|1|I|U|1503
9E1S|1|I|A|1504
9E1S|1|I|G|1505

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain 2

50S ribosomal protein bL34

Chain C

50S ribosomal protein L2

Chain y

50S ribosomal protein bL28-c minus