IL_9E1S_065

3D structure

PDB id

9E1S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the ribosome-tunnel occluding hibernation factor bound to the Mycobacterium tuberculosis C- 50S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.39 Å

Loop

Sequence

AAAAC*GGGCU

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9E1S_065 not in the Motif Atlas

Geometric match to IL_4WF9_074

Geometric discrepancy: 0.3527

The information below is about IL_4WF9_074

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_66798.3

Basepair signature

cWW-L-R-L-R-tHS-cWW

Number of instances in this motif group

7

Unit IDs

9E1S|1|I|A|1579
9E1S|1|I|A|1580
9E1S|1|I|A|1581
9E1S|1|I|A|1582
9E1S|1|I|C|1583
*
9E1S|1|I|G|1621
9E1S|1|I|G|1622
9E1S|1|I|G|1623
9E1S|1|I|C|1624
9E1S|1|I|U|1625

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L2