IL_9E1S_100

3D structure

PDB id

9E1S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the ribosome-tunnel occluding hibernation factor bound to the Mycobacterium tuberculosis C- 50S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.39 Å

Loop

Sequence

UUUGUGUAGGAUAGGUGGGAGACUGUGAAACCUCGAC*GUUGGGGCGGAGUCGUUGUUGAAAUACCACUCUGA

Length

72 nucleotides

Bulged bases

9E1S|1|I|G|2347, 9E1S|1|I|G|2349, 9E1S|1|I|G|2361, 9E1S|1|I|G|2370, 9E1S|1|I|A|2371, 9E1S|1|I|A|2372, 9E1S|1|I|U|2376, 9E1S|1|I|C|2377, 9E1S|1|I|G|2393, 9E1S|1|I|G|2394, 9E1S|1|I|A|2395, 9E1S|1|I|G|2396, 9E1S|1|I|U|2397, 9E1S|1|I|U|2400, 9E1S|1|I|U|2401, 9E1S|1|I|G|2402, 9E1S|1|I|G|2405, 9E1S|1|I|A|2413, 9E1S|1|I|C|2414, 9E1S|1|I|U|2415, 9E1S|1|I|U|2417

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9E1S|1|I|U|2344
9E1S|1|I|U|2345
9E1S|1|I|U|2346
9E1S|1|I|G|2347
9E1S|1|I|U|2348
9E1S|1|I|G|2349
9E1S|1|I|U|2350
9E1S|1|I|A|2351
9E1S|1|I|G|2352
9E1S|1|I|G|2353
9E1S|1|I|A|2354
9E1S|1|I|U|2355
9E1S|1|I|A|2356
9E1S|1|I|G|2357
9E1S|1|I|G|2358
9E1S|1|I|U|2359
9E1S|1|I|G|2360
9E1S|1|I|G|2361
9E1S|1|I|G|2362
9E1S|1|I|A|2363
9E1S|1|I|G|2364
9E1S|1|I|A|2365
9E1S|1|I|C|2366
9E1S|1|I|U|2367
9E1S|1|I|G|2368
9E1S|1|I|U|2369
9E1S|1|I|G|2370
9E1S|1|I|A|2371
9E1S|1|I|A|2372
9E1S|1|I|A|2373
9E1S|1|I|C|2374
9E1S|1|I|C|2375
9E1S|1|I|U|2376
9E1S|1|I|C|2377
9E1S|1|I|G|2378
9E1S|1|I|A|2379
9E1S|1|I|C|2380
*
9E1S|1|I|G|2385
9E1S|1|I|U|2386
9E1S|1|I|U|2387
9E1S|1|I|G|2388
9E1S|1|I|G|2389
9E1S|1|I|G|2390
9E1S|1|I|G|2391
9E1S|1|I|C|2392
9E1S|1|I|G|2393
9E1S|1|I|G|2394
9E1S|1|I|A|2395
9E1S|1|I|G|2396
9E1S|1|I|U|2397
9E1S|1|I|C|2398
9E1S|1|I|G|2399
9E1S|1|I|U|2400
9E1S|1|I|U|2401
9E1S|1|I|G|2402
9E1S|1|I|U|2403
9E1S|1|I|U|2404
9E1S|1|I|G|2405
9E1S|1|I|A|2406
9E1S|1|I|A|2407
9E1S|1|I|A|2408
9E1S|1|I|U|2409
9E1S|1|I|A|2410
9E1S|1|I|C|2411
9E1S|1|I|C|2412
9E1S|1|I|A|2413
9E1S|1|I|C|2414
9E1S|1|I|U|2415
9E1S|1|I|C|2416
9E1S|1|I|U|2417
9E1S|1|I|G|2418
9E1S|1|I|A|2419

Current chains

Chain I

23S ribosomal RNA

Nearby chains