IL_9E1S_104

3D structure

PDB id

9E1S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the ribosome-tunnel occluding hibernation factor bound to the Mycobacterium tuberculosis C- 50S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.39 Å

Loop

Sequence

AG*CCU

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9E1S_104 not in the Motif Atlas

Homologous match to IL_8B0X_183

Geometric discrepancy: 0.1427

The information below is about IL_8B0X_183

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_15011.5

Basepair signature

cWW-L-cWW

Number of instances in this motif group

54

Unit IDs

9E1S|1|I|A|2691
9E1S|1|I|G|2692
*
9E1S|1|I|C|2736
9E1S|1|I|C|2737
9E1S|1|I|U|2738

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain 1

Ribosomal tunnel occlusion factor-RTOF

Chain 7

50S ribosomal protein bL37

Chain D

50S ribosomal protein L3