IL_9E1S_107

3D structure

PDB id

9E1S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the ribosome-tunnel occluding hibernation factor bound to the Mycobacterium tuberculosis C- 50S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.39 Å

Loop

Sequence

AUC*GGUUU

Length

8 nucleotides

Bulged bases

9E1S|1|I|U|2729

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9E1S_107 not in the Motif Atlas

Homologous match to IL_7A0S_086

Geometric discrepancy: 0.1718

The information below is about IL_7A0S_086

Detailed Annotation

Major groove minor groove platform with extra cWW

Broad Annotation

Major groove minor groove platform with extra cWW

Motif group

IL_36931.4

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

25

Unit IDs

9E1S|1|I|A|2697
9E1S|1|I|U|2698
9E1S|1|I|C|2699
*
9E1S|1|I|G|2727
9E1S|1|I|G|2728
9E1S|1|I|U|2729
9E1S|1|I|U|2730
9E1S|1|I|U|2731

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain 7

50S ribosomal protein bL37

Chain M

50S ribosomal protein L16