IL_9E1S_120

3D structure

PDB id

9E1S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the ribosome-tunnel occluding hibernation factor bound to the Mycobacterium tuberculosis C- 50S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.39 Å

Loop

Sequence

GAUAAC*GGAAAC

Length

12 nucleotides

Bulged bases

9E1S|1|I|A|3003

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9E1S_120 not in the Motif Atlas

Homologous match to IL_8B0X_165

Geometric discrepancy: 0.0584

The information below is about IL_8B0X_165

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_91079.1

Basepair signature

cWW-cWW-tWH-L-tHS-cWW

Number of instances in this motif group

8

Unit IDs

9E1S|1|I|G|2975
9E1S|1|I|A|2976
9E1S|1|I|U|2977
9E1S|1|I|A|2978
9E1S|1|I|A|2979
9E1S|1|I|C|2980
*
9E1S|1|I|G|3000
9E1S|1|I|G|3001
9E1S|1|I|A|3002
9E1S|1|I|A|3003
9E1S|1|I|A|3004
9E1S|1|I|C|3005

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain 4

50S ribosomal protein bL36

Chain G

50S ribosomal protein L6

Chain J

50S ribosomal protein L13