IL_9E1S_123

3D structure

PDB id

9E1S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the ribosome-tunnel occluding hibernation factor bound to the Mycobacterium tuberculosis C- 50S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.39 Å

Loop

Sequence

UGGAAG*UGUAG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9E1S_123 not in the Motif Atlas

Homologous match to IL_7A0S_101

Geometric discrepancy: 0.2226

The information below is about IL_7A0S_101

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_48489.3

Basepair signature

cWW-tSH-L-tHH-L-cWW

Number of instances in this motif group

9

Unit IDs

9E1S|1|I|U|3082
9E1S|1|I|G|3083
9E1S|1|I|G|3084
9E1S|1|I|A|3085
9E1S|1|I|A|3086
9E1S|1|I|G|3087
*
9E1S|1|I|U|3100
9E1S|1|I|G|3101
9E1S|1|I|U|3102
9E1S|1|I|A|3103
9E1S|1|I|G|3104

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain N

50S ribosomal protein L17

Chain P

50S ribosomal protein L19