IL_9E5M_001

3D structure

PDB id

9E5M (explore in PDB, NAKB, or RNA 3D Hub)

Description

env2 cobalamin riboswitch aptamer domain in complex with ethynyl-4,1'-biphenyl-cobalamin

Experimental method

X-RAY DIFFRACTION

Resolution

1.39 Å

Loop

Sequence

AAAAGCAUAG*CCU

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9E5M_001 not in the Motif Atlas

Geometric match to IL_4FRG_001

Geometric discrepancy: 0.1858

The information below is about IL_4FRG_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_88072.1

Basepair signature

cWW-L-R-L-cWW-L-L-R-L-R-L

Number of instances in this motif group

1

Unit IDs

9E5M|1|A|A|4
9E5M|1|A|A|5
9E5M|1|A|A|6
9E5M|1|A|A|7
9E5M|1|A|G|8
9E5M|1|A|C|9
9E5M|1|A|A|10
9E5M|1|A|U|11
9E5M|1|A|A|12
9E5M|1|A|G|13
*
9E5M|1|A|C|70
9E5M|1|A|C|71
9E5M|1|A|U|72

Current chains

Chain A

RNA (76-MER)

Nearby chains

Chain B

RNA (76-MER)