IL_9E6Q_001

3D structure

PDB id

9E6Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Pyrobaculum calidifontis 50S ribosomal subunit in complex with Dri

Experimental method

ELECTRON MICROSCOPY

Resolution

1.95 Å

Loop

Sequence

GUGGAUG*CUGAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_22311.1

Basepair signature

cWW-cWW-tSH-tHS-tHS-L-R-cWW

Number of instances in this motif group

10

Unit IDs

9E6Q|1|1|G|17
9E6Q|1|1|U|18
9E6Q|1|1|G|19
9E6Q|1|1|G|20
9E6Q|1|1|A|21
9E6Q|1|1|U|22
9E6Q|1|1|G|23
*
9E6Q|1|1|C|539
9E6Q|1|1|U|540
9E6Q|1|1|G|541
9E6Q|1|1|A|542
9E6Q|1|1|A|543
9E6Q|1|1|A|544
9E6Q|1|1|C|545

Current chains

Chain 1

23S rRNA

Nearby chains

Chain AC

Large ribosomal subunit protein uL4

Chain AT

Large ribosomal subunit protein uL22

Chain Ab

Large ribosomal subunit protein eL32