3D structure

PDB id
9E6Q (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of the Pyrobaculum calidifontis 50S ribosomal subunit in complex with Dri
Experimental method
ELECTRON MICROSCOPY
Resolution
1.95 Å

Loop

Sequence
CAAAU*AGAUGUG
Length
12 nucleotides
Bulged bases
9E6Q|1|1|U|284
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_65996.1
Basepair signature
cWW-L-cWW-L-tSH-R-cWW
Number of instances in this motif group
4

Unit IDs

9E6Q|1|1|C|255
9E6Q|1|1|A|256
9E6Q|1|1|A|257
9E6Q|1|1|A|258
9E6Q|1|1|U|259
*
9E6Q|1|1|A|281
9E6Q|1|1|G|282
9E6Q|1|1|A|283
9E6Q|1|1|U|284
9E6Q|1|1|G|285
9E6Q|1|1|U|286
9E6Q|1|1|G|287

Current chains

Chain 1
23S rRNA

Nearby chains

Chain AF
Large ribosomal subunit protein eL8
Chain AM
50S ribosomal protein L15e

Coloring options:

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