IL_9E6Q_025

3D structure

PDB id

9E6Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Pyrobaculum calidifontis 50S ribosomal subunit in complex with Dri

Experimental method

ELECTRON MICROSCOPY

Resolution

1.95 Å

Loop

Sequence

CGCAG*CGAGG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9E6Q_025 not in the Motif Atlas

Homologous match to IL_4V9F_022

Geometric discrepancy: 0.0736

The information below is about IL_4V9F_022

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_17136.7

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

14

Unit IDs

9E6Q|1|1|C|728
9E6Q|1|1|G|729
9E6Q|1|1|C|730
9E6Q|1|1|A|731
9E6Q|1|1|G|732
*
9E6Q|1|1|C|745
9E6Q|1|1|G|746
9E6Q|1|1|A|747
9E6Q|1|1|G|748
9E6Q|1|1|G|749

Current chains

Chain 1

23S rRNA

Nearby chains

Chain AP

Large ribosomal subunit protein eL18