IL_9E6Q_026

3D structure

PDB id

9E6Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Pyrobaculum calidifontis 50S ribosomal subunit in complex with Dri

Experimental method

ELECTRON MICROSCOPY

Resolution

1.95 Å

Loop

Sequence

GAAAC*GUGAUAGC

Length

13 nucleotides

Bulged bases

9E6Q|1|1|G|919, 9E6Q|1|1|G|923

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_73855.1

Basepair signature

cWW-L-R-L-R-tWH-L-cWW

Number of instances in this motif group

10

Unit IDs

9E6Q|1|1|G|791
9E6Q|1|1|A|792
9E6Q|1|1|A|793
9E6Q|1|1|A|794
9E6Q|1|1|C|795
*
9E6Q|1|1|G|917
9E6Q|1|1|U|918
9E6Q|1|1|G|919
9E6Q|1|1|A|920
9E6Q|1|1|U|921
9E6Q|1|1|A|922
9E6Q|1|1|G|923
9E6Q|1|1|C|924

Current chains

Chain 1

23S rRNA

Nearby chains

Chain AC

Large ribosomal subunit protein uL4

Chain AL

Large ribosomal subunit protein uL15

Chain AM

50S ribosomal protein L15e

Chain Ad

Large ribosomal subunit protein eL37