IL_9E6Q_029

3D structure

PDB id

9E6Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Pyrobaculum calidifontis 50S ribosomal subunit in complex with Dri

Experimental method

ELECTRON MICROSCOPY

Resolution

1.95 Å

Loop

Sequence

UGAAG*UGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_15190.1

Basepair signature

cWW-tSH-tHS-tHS-cWW

Number of instances in this motif group

22

Unit IDs

9E6Q|1|1|U|820
9E6Q|1|1|G|821
9E6Q|1|1|A|822
9E6Q|1|1|A|823
9E6Q|1|1|G|824
*
9E6Q|1|1|U|841
9E6Q|1|1|G|842
9E6Q|1|1|G|843
9E6Q|1|1|A|844
9E6Q|1|1|G|845

Current chains

Chain 1

23S rRNA

Nearby chains

Chain AA

Large ribosomal subunit protein uL2

Chain AQ

Large ribosomal subunit protein eL19

Chain Ai

Large ribosomal subunit protein eL43