IL_9E6Q_033

3D structure

PDB id

9E6Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Pyrobaculum calidifontis 50S ribosomal subunit in complex with Dri

Experimental method

ELECTRON MICROSCOPY

Resolution

1.95 Å

Loop

Sequence

CC*GAG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9E6Q_033 not in the Motif Atlas

Geometric match to IL_8VTW_023

Geometric discrepancy: 0.0835

The information below is about IL_8VTW_023

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_68541.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

11

Unit IDs

9E6Q|1|1|C|955
9E6Q|1|1|C|956
*
9E6Q|1|1|G|1061
9E6Q|1|1|A|1062
9E6Q|1|1|G|1063

Current chains

Chain 1

23S rRNA

Nearby chains

Chain AL

Large ribosomal subunit protein uL15

Chain AP

Large ribosomal subunit protein eL18