IL_9E6Q_034

3D structure

PDB id

9E6Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Pyrobaculum calidifontis 50S ribosomal subunit in complex with Dri

Experimental method

ELECTRON MICROSCOPY

Resolution

1.95 Å

Loop

Sequence

CGGAG*CGUAGAAG

Length

13 nucleotides

Bulged bases

9E6Q|1|1|A|1052

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_90775.2

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

30

Unit IDs

9E6Q|1|1|C|961
9E6Q|1|1|G|962
9E6Q|1|1|G|963
9E6Q|1|1|A|964
9E6Q|1|1|G|965
*
9E6Q|1|1|C|1049
9E6Q|1|1|G|1050
9E6Q|1|1|U|1051
9E6Q|1|1|A|1052
9E6Q|1|1|G|1053
9E6Q|1|1|A|1054
9E6Q|1|1|A|1055
9E6Q|1|1|G|1056

Current chains

Chain 1

23S rRNA

Nearby chains

Chain AP

Large ribosomal subunit protein eL18

Chain AS

Large ribosomal subunit protein eL21

Chain AY

Large ribosomal subunit protein uL30