IL_9E6Q_034
3D structure
- PDB id
- 9E6Q (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Pyrobaculum calidifontis 50S ribosomal subunit in complex with Dri
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.95 Å
Loop
- Sequence
- CGGAG*CGUAGAAG
- Length
- 13 nucleotides
- Bulged bases
- 9E6Q|1|1|A|1052
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9E6Q_034 not in the Motif Atlas
- Geometric match to IL_4V9F_048
- Geometric discrepancy: 0.1875
- The information below is about IL_4V9F_048
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_70923.9
- Basepair signature
- cWW-tSS-tSH-L-tHS-tHS-cWW
- Number of instances in this motif group
- 27
Unit IDs
9E6Q|1|1|C|961
9E6Q|1|1|G|962
9E6Q|1|1|G|963
9E6Q|1|1|A|964
9E6Q|1|1|G|965
*
9E6Q|1|1|C|1049
9E6Q|1|1|G|1050
9E6Q|1|1|U|1051
9E6Q|1|1|A|1052
9E6Q|1|1|G|1053
9E6Q|1|1|A|1054
9E6Q|1|1|A|1055
9E6Q|1|1|G|1056
Current chains
- Chain 1
- 23S rRNA
Nearby chains
- Chain AP
- Large ribosomal subunit protein eL18
- Chain AS
- Large ribosomal subunit protein eL21
- Chain AY
- Large ribosomal subunit protein uL30
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