IL_9E6Q_042
3D structure
- PDB id
- 9E6Q (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Pyrobaculum calidifontis 50S ribosomal subunit in complex with Dri
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.95 Å
Loop
- Sequence
- UUAAG*CGAGA
- Length
- 10 nucleotides
- Bulged bases
- 9E6Q|1|1|G|1282
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9E6Q_042 not in the Motif Atlas
- Homologous match to IL_4V9F_037
- Geometric discrepancy: 0.0674
- The information below is about IL_4V9F_037
- Detailed Annotation
- UAA/GAN
- Broad Annotation
- No text annotation
- Motif group
- IL_38507.2
- Basepair signature
- cWW-tWH-L-tHS-cWW
- Number of instances in this motif group
- 16
Unit IDs
9E6Q|1|1|U|1118
9E6Q|1|1|U|1119
9E6Q|1|1|A|1120
9E6Q|1|1|A|1121
9E6Q|1|1|G|1122
*
9E6Q|1|1|C|1279
9E6Q|1|1|G|1280
9E6Q|1|1|A|1281
9E6Q|1|1|G|1282
9E6Q|1|1|A|1283
Current chains
- Chain 1
- 23S rRNA
Nearby chains
- Chain 2
- 5S ribosomal RNA; 5S rRNA
- Chain AY
- Large ribosomal subunit protein uL30
- Chain Ab
- Large ribosomal subunit protein eL32
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