IL_9E6Q_042

3D structure

PDB id

9E6Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Pyrobaculum calidifontis 50S ribosomal subunit in complex with Dri

Experimental method

ELECTRON MICROSCOPY

Resolution

1.95 Å

Loop

Sequence

UUAAG*CGAGA

Length

10 nucleotides

Bulged bases

9E6Q|1|1|G|1282

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_08938.1

Basepair signature

cWW-tWH-L-tHS-cWW

Number of instances in this motif group

22

Unit IDs

9E6Q|1|1|U|1118
9E6Q|1|1|U|1119
9E6Q|1|1|A|1120
9E6Q|1|1|A|1121
9E6Q|1|1|G|1122
*
9E6Q|1|1|C|1279
9E6Q|1|1|G|1280
9E6Q|1|1|A|1281
9E6Q|1|1|G|1282
9E6Q|1|1|A|1283

Current chains

Chain 1

23S rRNA

Nearby chains

Chain 2

5S ribosomal RNA; 5S rRNA

Chain AY

Large ribosomal subunit protein uL30

Chain Ab

Large ribosomal subunit protein eL32