IL_9E6Q_044
3D structure
- PDB id
- 9E6Q (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Pyrobaculum calidifontis 50S ribosomal subunit in complex with Dri
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.95 Å
Loop
- Sequence
- GUG*CC
- Length
- 5 nucleotides
- Bulged bases
- 9E6Q|1|1|U|1132
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9E6Q_044 not in the Motif Atlas
- Homologous match to IL_4V9F_039
- Geometric discrepancy: 0.1196
- The information below is about IL_4V9F_039
- Detailed Annotation
- Single bulged U
- Broad Annotation
- No text annotation
- Motif group
- IL_89505.4
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 117
Unit IDs
9E6Q|1|1|G|1131
9E6Q|1|1|U|1132
9E6Q|1|1|G|1133
*
9E6Q|1|1|C|1275
9E6Q|1|1|C|1276
Current chains
- Chain 1
- 23S rRNA
Nearby chains
- Chain AG
- Large ribosomal subunit protein uL13
- Chain AK
- eL14
- Chain AR
- Large ribosomal subunit protein eL20
- Chain AY
- Large ribosomal subunit protein uL30
- Chain Aj
- DJ-1/PfpI domain-containing protein
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