IL_9E6Q_045

3D structure

PDB id

9E6Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Pyrobaculum calidifontis 50S ribosomal subunit in complex with Dri

Experimental method

ELECTRON MICROSCOPY

Resolution

1.95 Å

Loop

Sequence

CUUAGUG*CUAAG

Length

12 nucleotides

Bulged bases

9E6Q|1|1|A|1269

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_57188.6

Basepair signature

cWW-tWW-L-tWW-cWW-cSH

Number of instances in this motif group

6

Unit IDs

9E6Q|1|1|C|1138
9E6Q|1|1|U|1139
9E6Q|1|1|U|1140
9E6Q|1|1|A|1141
9E6Q|1|1|G|1142
9E6Q|1|1|U|1143
9E6Q|1|1|G|1144
*
9E6Q|1|1|C|1266
9E6Q|1|1|U|1267
9E6Q|1|1|A|1268
9E6Q|1|1|A|1269
9E6Q|1|1|G|1270

Current chains

Chain 1

23S rRNA

Nearby chains

Chain AE

Large ribosomal subunit protein uL6

Chain AG

Large ribosomal subunit protein uL13

Chain AK

eL14

Chain AR

Large ribosomal subunit protein eL20