IL_9E6Q_048

3D structure

PDB id

9E6Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Pyrobaculum calidifontis 50S ribosomal subunit in complex with Dri

Experimental method

ELECTRON MICROSCOPY

Resolution

1.95 Å

Loop

Sequence

CC*GUG

Length

5 nucleotides

Bulged bases

9E6Q|1|1|U|1311

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9E6Q_048 not in the Motif Atlas

Geometric match to IL_8F5G_001

Geometric discrepancy: 0.1812

The information below is about IL_8F5G_001

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_89505.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

117

Unit IDs

9E6Q|1|1|C|1291
9E6Q|1|1|C|1292
*
9E6Q|1|1|G|1310
9E6Q|1|1|U|1311
9E6Q|1|1|G|1312

Current chains

Chain 1

23S rRNA

Nearby chains

Chain AY

Large ribosomal subunit protein uL30

Chain Ab

Large ribosomal subunit protein eL32