IL_9E6Q_050

3D structure

PDB id

9E6Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Pyrobaculum calidifontis 50S ribosomal subunit in complex with Dri

Experimental method

ELECTRON MICROSCOPY

Resolution

1.95 Å

Loop

Sequence

GGCAGAAG*UGGAC

Length

13 nucleotides

Bulged bases

9E6Q|1|1|A|1338

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_90775.2

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

30

Unit IDs

9E6Q|1|1|G|1335
9E6Q|1|1|G|1336
9E6Q|1|1|C|1337
9E6Q|1|1|A|1338
9E6Q|1|1|G|1339
9E6Q|1|1|A|1340
9E6Q|1|1|A|1341
9E6Q|1|1|G|1342
*
9E6Q|1|1|U|1361
9E6Q|1|1|G|1362
9E6Q|1|1|G|1363
9E6Q|1|1|A|1364
9E6Q|1|1|C|1365

Current chains

Chain 1

23S rRNA

Nearby chains

Chain AC

Large ribosomal subunit protein uL4

Chain AV

Large ribosomal subunit protein uL24

Chain Ab

Large ribosomal subunit protein eL32