IL_9E6Q_051

3D structure

PDB id

9E6Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Pyrobaculum calidifontis 50S ribosomal subunit in complex with Dri

Experimental method

ELECTRON MICROSCOPY

Resolution

1.95 Å

Loop

Sequence

GUAGUAG*CGAACC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_02666.1

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

17

Unit IDs

9E6Q|1|1|G|1390
9E6Q|1|1|U|1391
9E6Q|1|1|A|1392
9E6Q|1|1|G|1393
9E6Q|1|1|U|1394
9E6Q|1|1|A|1395
9E6Q|1|1|G|1396
*
9E6Q|1|1|C|2132
9E6Q|1|1|G|2133
9E6Q|1|1|A|2134
9E6Q|1|1|A|2135
9E6Q|1|1|C|2136
9E6Q|1|1|C|2137

Current chains

Chain 1

23S rRNA

Nearby chains

Chain AC

Large ribosomal subunit protein uL4

Chain AT

Large ribosomal subunit protein uL22